PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676743836
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family DBB
Protein Properties Length: 183aa    MW: 19933.5 Da    PI: 6.1415
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676743836genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.42.5e-07433534
   zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeH 34
                C+ +e+  ++ fC  ++  lC+ C ++ H
  676743836  4 LCDACENAAAIVFCAADEAALCRACDEKVH 33
               6*******9******************998 PP

2zf-B_box279.4e-095291237
   zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37
               ++++C+ +e+ ++ +fCe +++ lC +C +  H g    H
  676743836 52 NAPCCDICENAPAFFFCEIDGSSLCLQCDMVVHVGgkrtH 91
               789***************************9996555556 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.338147IPR000315B-box-type zinc finger
CDDcd000211.54E-6345No hitNo description
PfamPF006436.5E-6442IPR000315B-box-type zinc finger
SMARTSM003364.6E-7447IPR000315B-box-type zinc finger
SMARTSM003362.0E-125196IPR000315B-box-type zinc finger
PROSITE profilePS501198.935196IPR000315B-box-type zinc finger
PfamPF006431.5E-65291IPR000315B-box-type zinc finger
CDDcd000211.44E-75696No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MRILCDACEN AAAIVFCAAD EAALCRACDE KVHMCNKLAS RHVRVGLAEP SNAPCCDICE  60
NAPAFFFCEI DGSSLCLQCD MVVHVGGKRT HGRFLLLRQR IEFPGDKPKP NSTRDSLQNH  120
RVSANANGEA NGKLDDEMID LNANPQRVHE PASNNQGIDV NNANNHEPAG VVPVGPFKRE  180
PEK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3528900.0AK352890.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-08-L04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006411690.11e-126hypothetical protein EUTSA_v10026348mg
SwissprotC0SVM51e-125BBX19_ARATH; B-box zinc finger protein 19
TrEMBLV4MKE71e-126V4MKE7_EUTSA; Uncharacterized protein
STRINGscaffold_700091.11e-123(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21682469
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.11e-126DBB family protein